You can certainly imagine how tired your back will get staying in this position for even a few minutes. But the kneeling version is even harder since your glutes and hamstrings, two very strong muscles of the lower extremity, cannot help to support the back while in the kneeling position.
As you have probably realized, it is almost impossible to be fully ergonomic when doing gardening as the tasks are done at such a low level to the ground. For that reason, the most recommended posture is an ever-changing posture.
Spend a few minutes kneeling on the ground to plant the flowers, then get back up to do some tasks that require different postures (standing to move some soil, standing to rake, etc…).
You may also switch between different positions such as crouching, kneeling, sitting, lunge position etc. alternating between each task every 5-10 minutes or so. This will help alternate the primary muscles being used and avoid over fatiguing the same muscles. Also, make sure to avoid too many twisting movements. This may occur when you have your little bench in one spot, and you want to work on some plants that are to the side of you. Instead, move the bench so you are front-facing the plants.